There are lots of motivations to do science – to solve a
grand global challenge, to answer a fundamental question about how the world
works, because it’s a job and you’ve got to do something before pub opening
times. For me, it is about solving puzzles – piecing together a coherent story
from a jumble of observations.
In our most recently published paper, we
got to do exactly that, and best of all, we got to draw it all on a white
board, like in CSI.
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| Solving science problems, one whiteboard at a time |
We started with an observation (from a previously published paper).
When mice get viral lung infections, the bacteria in their guts (the gut
microbiome) changes. This was quite surprising. So in the follow up we wanted
to understand why, but also to understand if the changes in the microbiome
affected anything.
But first of all, why we did care at all. As a brief
reminder, it is entirely normal to have gut bacteria, in fact various estimates
put the number of cells of gut bacteria as higher than the cells of person
surrounding them. The gut bacteria do a whole range of important things, from
breaking down your food for you to regulating your immune system.
Back to the story. One other thing we did know was that when
infected with a virus, mice lose weight. In fact, relative to body size they
lose quite a lot of weight, up to 25%, which they can put back on very quickly.
This was our starting point and we speculated it could be due to a number of
reasons, including the increased effort of breathing. Helen (the student
working on the project) made the very simple step of measuring the amount of
food eaten. She found that over the course of the infection, the mice stopped
eating and it was this that caused the weight loss. When we mimicked this
reduction in eating by reducing the amount of food the mice had per day, we saw
an identical change in the gut microbiome. So problem one solved.
However, this then led to the next question – why do the
mice stop eating? We drew on our previous studies, in which we had showed that
the immune response to infection was associated with weight loss after
infection. Specifically we were interested in an immune cell called the CD8 T cell and a
signalling molecule called Tumour
Necrosis Factor (TNF), which the immune system releases to activate other
cells. We used antibodies (molecules that are recognise other proteins very specifically)
to block CD8 T cells or TNF to see if the immune response was responsible for
weight loss. To cut the story short, T cells were important, TNF not so much. It
still begs the question, why does the immune system cause weight loss. At this
point the simple answer is, we don’t know.
We then switched our attention to the downstream effects. One
thing we wanted to see was if the change in the gut bacteria, changed susceptibility
to other gut infections. In our hands, they didn’t – when we infected mice with
a lung virus, there was no effect on a subsequent gut infection. However, we
did observe one difference after infection. There is a complex network of chemicals
in your guts, called the metabolome. After infection, these biochemicals in the
guts changed. What was intriguing was that some of the chemicals that increased
have previously been described as anti-inflammatory. One crazy speculation from
this is that by stopping eating the mice actually get better, but we have no
proof that this is true and it might just be a correlation.
So what did we learn? When mice are infected with a
respiratory virus (in their lungs) their gut microbes change. The gut microbes
change because they lose weight. They lose weight because they stop eating. And
they stop eating because of something to do with the immune system. So problem
solved, sort of.
